Contents:
- Mendel,MD
- Requirements
- Other Libraries Needed
- OMIM Data
- Docker
- Manual Installation
- Installing PostgreSQL Database
- Installation on Ubuntu 16.04 LTS (tested)
- Installing the Pynnotator
- Installing Mendel,MD
- Creating a superuser
- Importing Data
- Upload your VCFs using the web interface
- Start the annotation
- Deployment on RedHat/CentOS 7
- Pynnotator
- Libraries
- Databases
- Features
- Requirements
- Installation
- Test
- Clinical Cases
- Filter Analysis
- One Click
- Family Analysis
- Individuals Options
- VCF Options
- Annovar Options
- Func.refGene
- Gene.refGene
- ExonicFunc.refGene
- AAChange.refGene
- phastConsElements46way
- genomicSuperDups
- esp6500si_all
- 1000g2012apr_all
- LJB2_SIFT
- LJB2_PolyPhen2_HDIV
- LJB2_PP2_HDIV_Pred
- LJB2_PolyPhen2_HVAR
- LJB2_PolyPhen2_HVAR_Pred
- LJB2_LRT
- LJB2_LRT_Pred
- LJB2_MutationTaster
- LJB2_MutationTaster_Pred
- LJB_MutationAssessor
- LJB_MutationAssessor_Pred
- LJB2_FATHMM
- LJB2_GERP++
- LJB2_PhyloP
- LJB2_SiPhy
- cosmic65
- avsift
- SIFT
- PolyPhen-2
- Condel
- Extension
Indices and tables
Source: Welcome to Mendel,MD’s documentation! — 0.2 documentation