Report LGC 190815

##### ERROR MESSAGE: SAM/BAM/CRAM file /media/raony/storage/received_exomes/020715/VSS.bam is malformed: Invalid file pointer: 1091655611930580
INFO 09:09:08,041 SAMDataSource$SAMReaders – Done initializing BAM readers: total time 2.47
INFO 09:09:09,790 IntervalUtils – Processing 46347343 bp from intervals
INFO 09:09:10,005 GenomeAnalysisEngine – Preparing for traversal over 14 BAM files
INFO 09:09:10,913 GenomeAnalysisEngine – Done preparing for traversal
INFO 09:09:10,913 ProgressMeter – [INITIALIZATION COMPLETE; STARTING PROCESSING]
INFO 09:09:10,914 ProgressMeter – | processed | time | per 1M | | total | remaining
INFO 09:09:10,914 ProgressMeter – Location | sites | elapsed | sites | completed | runtime | runtime
INFO 09:09:10,914 DepthOfCoverage – Per-Locus Depth of Coverage output was omitted
INFO 09:09:40,917 ProgressMeter – chr1:949759 90012.0 30.0 s 5.6 m 0.0% 27.5 h 27.5 h